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Liu, Xiao Jun Allen, Serita D. Frey, Jerry M. Melillo, and Kristen M. DeAngelis. “Physical protection regulates microbial thermal responses to chronic soil warming.” Soil Biology and Biochemistry 159 (2021): 108298. PDF

Xiaojun Allen Liu, Grace Pold, Luiz A. Domeignoz-Horta, Kevin M. Geyer, Hannah Caris, Hannah Nicolson, Kenneth M. Kemner, Serita D. Frey, Jerry M. Melillo, Kristen M. DeAngelis. “Soil aggregate-mediated microbial responses to long-term warming.” Soil Biology and Biochemistry (2021), 152, p 108055. HTML-OA, PDF

Maureen A. Morrow, Grace Pold, Kristen M. DeAngelis. “Draft Genome Sequence of a terrestrial Planctomyetes, Singulisphera sp. GP187, Isolated from Forest Soil.” Microbiology Resource Announcements (2020) 9, no. 50 HTML-OA

Domeignoz-Horta, Luiz A., Grace Pold, Xiao-Jun Allen Liu, Serita D. Frey, Jerry M. Melillo, and Kristen M. DeAngelis. “Microbial diversity drives carbon use efficiency in a model soil.” Nature communications 11, no. 1 (2020): 1-10. HTML-OA

Pold, Grace, Luiz A. Domeignoz-Horta, and Kristen M. DeAngelis. “Heavy and wet: The consequences of violating assumptions of measuring soil microbial growth efficiency using the 18O water method.” Elementa: Science of the Anthropocene 8, no. 1 (2020). HTML-OA

Kristen M. DeAngelis, Grace Pold. “Genome Sequences of Frankineae sp. MT45 and Jatrophihabitans sp. GAS493, two novel Actinobacteria isolated from forest soil.” Microbiology Resource Announcements (2020) 9, no. 38. HTML-OA

Alison E. Murray, John Freudenstein, Simonetta Gribaldo, Roland Hatzenpichler, Philip Hugenholtz, Peter Kämpfer, Konstantinos T. Konstantinidis, Christopher E. Lane, R. Thane Papke, Donovan H. Parks, Ramon Rossello-Mora, Matthew B. Stott, Iain C. Sutcliffe, J. Cameron Thrash, Stephanus N. Venter, William B. Whitman, Silvia G. Acinas, Rudolf I. Amann, Karthik Anantharaman, Jean Armengaud, Brett J. Baker, Roman A. Barco, Helge B. Bode, Eric S. Boyd, Carrie L. Brady, Paul Carini, Patrick S. G. Chain, Daniel R. Colman, Kristen M. DeAngelis, Maria Asuncion de los Rios, Paulina Estrada-de los Santos, Christopher A. Dunlap, Jonathan A. Eisen, David Emerson, Thijs J. G. Ettema, Damien Eveillard, Peter R. Girguis, Ute Hentschel, James T. Hollibaugh, Laura A. Hug, William P. Inskeep, Elena P. Ivanova, Hans-Peter Klenk, Wen-Jun Li, Karen G. Lloyd, Frank E. Löffler, Thulani P. Makhalanyane, Duane P. Moser, Takuro Nunoura, Marike Palmer, Victor Parro, Carlos Pedrós-Alió, Alexander J. Probst, Theo H. M. Smits, Andrew D. Steen, Emma T. Steenkamp, Anja Spang, Frank J. Stewart, James M. Tiedje, Peter Vandamme, Michael Wagner, Feng-Ping Wang, Pablo Yarza, Brian P. Hedlund & Anna-Louise Reysenbach. “Roadmap for naming uncultivated Archaea and Bacteria.” Nature Microbiology(2020): 1-7. HTML-OA, PDF

Pold, Grace, Luiz A. Domeignoz-Horta, Eric W. Morrison, Serita D. Frey, Seeta A. Sistla, and Kristen M. DeAngelis. “Carbon use efficiency and its temperature sensitivity covary in soil bacteria.” Mbio 11, no. 1 (2020). HTML-OA

Chaput, Gina, Andrew F. Billings, Lani DeDiego, Roberto Orellana, Joshua N. Adkins, Carrie D. Nicora, Young-Mo Kim, Rosalie Chu, Blake Simmons, and Kristen M. DeAngelis. “Lignin induced iron reduction by novel sp., Tolumonas lignolytic BRL6-1.” PLoS ONE (2020). HTML-OA

Pold, Grace, Seeta A. Sistla, and Kristen M. DeAngelis. “Metabolic tradeoffs and heterogeneity in microbial responses to temperature determine the fate of litter carbon in simulations of a warmer world.” Biogeosciences 16, no. 24 (2019). HTML-OA

DeAngelis, Kristen M., Priyanka Roy Chowdhury, Grace Pold, Adriana Romero-Olivares, and Serita Frey. “Microbial responses to experimental soil warming: Five testable hypotheses.” In Ecosystem Consequences of Soil Warming, pp. 141-156. Academic Press, 2019. PDF

Steen, Andrew D., Alexander Crits-Christoph, Paul Carini, Kristen M. DeAngelis, Noah Fierer, Karen G. Lloyd, and J. Cameron Thrash. “High proportions of bacteria and archaea across most biomes remain uncultured.” The ISME journal 13, no. 12 (2019): 3126-3130. HTML-OA

Chaput, Gina, Jacob Ford, Lani DeDiego, Achala Narayanan, Wing Yin Tam, Meghan Whalen, Marcel Huntemann et al. “Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source.” Microbiology resource announcements 8, no. 18 (2019). HTML-OA

Domeignoz-Horta, Luiz A., Kristen M. DeAngelis, and Grace Pold. “Draft genome sequence of Acidobacteria group 1 Acidipila sp. strain EB88, isolated from forest soil.” Microbiology resource announcements 8, no. 1 (2019). HTML-OA

Bailey VL, Bond‐Lamberty B, DeAngelis K, Grandy AS, Hawkes CV, Heckman K, Lajtha K, Phillips RP, Sulman BN, Todd‐Brown KE, Wallenstein MD. Soil carbon cycling proxies: understanding their critical role in predicting climate change feedbacks. Global change biology. 2018 Mar;24(3):895-905. HTML-OA

Pold G, Huntemann M, Pillay M, Mikhailova N, Stamatis D, Reddy TB, Daum C, Shapiro N, Kyrpides N, Woyke T, DeAngelis KM. Draft Genome Sequences of Three Strains of a Novel Rhizobiales Species Isolated from Forest Soil. Genome announcements. 2018 Feb 1;6(5):e01452-17. HTML-OA

Pold G, Conlon EM, Huntemann M, Pillay M, Mikhailova N, Stamatis D, Reddy TB, Daum C, Shapiro N, Kyrpides N, Woyke T. Genome Sequence of Verrucomicrobium sp. Strain GAS474, a Novel Bacterium Isolated from Soil. Genome announcements. 2018 Jan 25;6(4):e01451-17. HTML-OA

Melillo, Jerry M., Serita D. Frey, Kristen M. DeAngelis, William J. Werner, Michael J. Bernard, Francis P. Bowles, Grace Pold, Melissa A. Knorr, and A. Stuart Grandy. “Long-term pattern and magnitude of soil carbon feedback to the climate system in a warming world.” Science 358, no. 6359 (2017): 101-105. HTMLPDF

Jiménez, Diego Javier, Francisco Dini-Andreote, Kristen M. DeAngelis, Steven W. Singer, Joana Falcão Salles, and Jan Dirk van Elsas. “Ecological Insights into the Dynamics of Plant Biomass-Degrading Microbial Consortia.” Trends in Microbiology 25, no. 10 (2017): 789. HTMLPDF

Grace Pold+, Stuart Grandy, Jerry Melillo, Kristen M DeAngelis* (2017) “Changes in substrate availability drive carbon cycle response to chronic warming.” Soil Biology and Biochemistry, 110:68-78. HTML-OA

Orellana R, Chaput G, Markillie LM, Mitchell H, Gaffrey M, Orr G, DeAngelis KM. Multi-time series RNA-seq analysis of Enterobacter lignolyticus SCF1 during growth in lignin-amended medium. PloS one. 2017 Oct 19;12(10):e0186440. HTML-OA

Grace Pold+, Andrew F. Billings+, Jeff L. Blanchard, Daniel B. Burkhardt+, Serita D. Frey, Jerry M. Melillo, Julia Schnabel+, Linda T. A. van Diepen, Kristen M. DeAngelis* (2016) “Long-term warming alters carbohydrate degradation potential in temperate forest soils.” Applied and Environmental Microbiology 82(22):6518-6530 HTML-OA

Billings, A+, JL Fortney, TC Hazen, B Simmons, KW Davenport, L Goodwin, N Ivanova, NC Kyrpides, K Mavromatis, T Woyke, KM DeAngelis*. (2015) “Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolyticus sp. nov.” Standards in Genomic Sciences, 10:106 HTML-OA

Pold, G+, J Melillo, KM DeAngelis*. (2015) “Two decades of warming increases diversity of a potentially lignolytic bacterial community.” Frontiers in Microbiology 6:480 HTML-OA

DeAngelis, KM*, G Pold+, B Topcuoglu+, L van Diepen, J Blanchard, J Melillo, S Frey. (2015) “Long-term forest soil warming alters microbial communities in temperate forest soils.” Frontiers in Microbiology. HTML-OA

Woo, HL+, N Ballor, TC Hazen, JL Fortney, BA Simmons, KW Davenport, L Goodwin, N Ivanova, NC Kyrpides, KMavromatis, T Woyke, KM DeAngelis*. (2014) “Complete genome sequence of Klebsiella lignolyticus BRL6-2.” Standards in Genome Sciences.

Woo, Hannah L, Sagar Utturkar, Dawn Klingeman, Blake Simmons, Kristen DeAngelis, Steven Brown, and Terry Hazen. (2014) “Draft Genome Sequence of the Lignin-degrading Burkholderia sp. str. LIG30, Isolated from Wet Tropical Forest Soil.” ASM Genome Announcements.

Pold, G+ & KM DeAngelis* (2013) “Up against the wall: the effects of climate warming on soil microbial diversity and the potential for feedbacks to the carbon cycle.” Diversity v5(2), 409-425 HTML-OA

Woo, HL+, BA Simmons, TC Hazen, KM DeAngelis*. (2013) “Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils.” Systematic and Applied Microbiology. 37(1):60-67 HTML, PDF

DeAngelis KM*, D Sharma+, R Varney, BA Simmons, N Isern, LM Markillie, C Nicora, AD Norbeck, RC Taylor, JT Aldrich, EW Robinson (2013) Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1. Frontiers in Microbiology. 4:280. HTML-OA

DeAngelis, KM* (2013) “Rhizosphere microbial communication as mediation for plant nutrient acquisition. In Molecular Microbial Ecology of the Rhizosphere.” Frans J. de Bruijn, ed. Wiley Blackwell, Inc., Hoboken NJ, USA. PDF

DeAngelis KM*, D Chivian, J Fortney, BA Simmons, TC Hazen, WL Silver (2013) “Changes in microbial dynamics during long-term decomposition in tropical forests.” Soil Biology and Biochemistry. 66: 60-68 HTML, PDF

DeAngelis, KM*, P D’haeseleer, D Chivian, B Simmons, AP Arkin, K Mavromatis, S Malfatti, S Tringe, TC Hazen (2013) “Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.” Standards in Genome Sciences. 7: 382-398 HTML-OA

DeAngelis, KM*, MK Firestone (2012) “Differences in phylogenetic clustering of soil microbial communities observed less by 16S rRNA genes than their transcripts.” Applied and Environmental Microbiology, 78(7):2459-61. HTML, PDF

DeAngelis, KM,* JL Fortney, S Borglin, WL Silver, B Simmons, TC Hazen (2012) “Anaerobic decomposition of switchgrass by tropical soil-derived feedstock adapted consortia.” mBio, Feb 21;3(1):e00249-311. HTML-OA, PDF

Khudyakov J, P D’haeseleer, SE Borglin, KM DeAngelis, H Woo, EA Lindquist, TC Hazen, BA Simmons, MP Thelen* (2012) “Global transcriptome response to ionic liquid of a tropical rain forest soil bacterium, Enterobacter lignolyticus SCF1.” Proceedings of the National Academy of Sciences USA, 109(32):E2173-82. HTML-OA

Borglin SE, D Joyner, Khudyakov J, P D’haeseleer, KM DeAngelis, TC Hazen* (2012) “Application of phenotypic microarrays to environmental microbiology.” Current Opinions in Biotechnology v23: 41-48 HTML-OA, PDF

DeAngelis, KM*, P D’haeseleer, D Chivian, JL Fortney, J Khudyakov, BA Simmons, HW Woo, AP Arkin, KW Davenport, L Goodwin, A Chen, N Ivanova, NC Kyrpides, K Mavromatis, T Woyke, TC Hazen (2011) “Complete genome sequence of Enterobacter lignolyticus SCF1.” Standards in Genome Sciences. 5:69-85. HTML-OA, PDF

Mackelprang, R, MP Waldrop, KM DeAngelis, MM David, KL Chavaria, SJ Blazewicz, E Rubin, J Jansson* (2011) “Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw.” Nature, 6;480(7377): 368-71. HTML, PDF

DeAngelis, KM, CH Wu, HR Beller, EL Brodie, R Chakraborty, TZ DeSantis, JL Fortney, TC Hazen, SR Osman, ME Singer, LM Tom, GL Andersen* (2011) “PCR-amplification independent methods for detection of microbial communities by high-density microarray PhyloChip.” Applied and Environmental Microbiology, 77(18): 6313-6322. HTML-OA, PDF

Shi, S, LM Condron*, M O’Callaghan, AE Richardson, KM DeAngelis, EE Jones, A Stewart, MK Firestone (2011) “Effects of selected root exudates components on soil microbial communities.” FEMS Microbiology Ecology, 77(3): 600-610. HTML-OA

DeAngelis, KM*, M Allgaier, Y Chavarria, J Fortney, P Hugenholz, WL Silver, B Simmons, TC Hazen (2011) “Characterization of trapped lignin-degrading microbes in tropical forest soil.” PLoS ONE 6(4): e19306. HTML-OA, PDF

DeAngelis KM*, W Silver, AW Thompson, MK Firestone (2010) “Microbial communities acclimate to recurring changes in soil redox potential status.” Environmental Microbiology 12(12): 3137-3149. HTML, PDF

DeAngelis, KM, JG Gladden, M Allgaier, P D’Haeseleer, JL Fortney, A Reddy, P Hugenholtz, S Singer, J Van Der Gheynst, WL Silver, B Simmons, and TC Hazen* (2010) “Strategies for Targeted Enzyme Discovery from lignocellulytic microbial communities using enrichment and metagenomics.” BioEnergy Research 3:146-158. HTML-OA, PDF

Sagaram, US, KM DeAngelis, P Trivedi, GL.Andersen, S Lu, N Wang* (2009) “Bacterial diversity analysis of citrus leaves from HLB pathogen infected citrus groves using PhyloChips and 16S rDNA clone library sequencing.” Applied and Environmental Microbiology, 75(6): 1566-1574. HTML-OA, PDF

DeAngelis KM, EL Brodie, TZ DeSantis, GL Andersen, Lindow SE and Firestone MK* (2009) “Selective, progressive response of soil microbial community to wild oat roots.” ISME Journal (3):168-178. HTML-OA, PDF

Templer P, Pett-Ridge J, DeAngelis KM, Firestone MK, Silver W* (2008) “Plant and microbial controls on nitrogen retention and loss in Puerto Rican forest soils.” Ecology, 89(11): 3030-3040. PDF

DeAngelis KM, Lindow SE and Firestone MK* (2008) “Bacterial quorum sensing and nitrogen cycling in rhizosphere soil.” FEMS Microbiology Ecology, v66:197-207. HTML-OA

DeAngelis KM, Firestone MK and Lindow SE* (2007) “Sensitive whole-cell biosensor suitable for detecting a variety of N-acyl homoserine lactones in intact rhizosphere microbial communities.” Applied and Environmental Microbiology, v73(11): 3724-3727. HTML-OA

Hawkes CV, DeAngelis KM, and Firestone MK* (2007) “Root Interactions with Microbial Communities and Processes.” In The Rhizosphere: an Ecological Perspective. Julie L. Whitbeck and Zoe Cardon, eds. Academic Press, Inc., San Diego CA, USA.

DeAngelis KM, Ji P, Firestone MK, Lindow SE* (2005) “Two Novel Bacterial Biosensors for the Detection of Nitrate Availability in the Rhizosphere.” Applied and Environmental Microbiology, vol 71 (12): 8537-8547 HTML-OA

+student mentored by DeAngelis, *corresponding author